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The Reaction Diagram Hid an NP-Complete Question

Assigning real molecules to an abstract reaction network while preserving mass balance and allowed mechanisms is computationally hard, but pruning helps in practice.

Published Updated Story ID: mp-2026-08-06-027
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Summary

Assigning real molecules to an abstract reaction network while preserving mass balance and allowed mechanisms is computationally hard, but pruning helps in practice.

A theoretical chemistry preprint formalizes molecular realizability: whether the nodes of an abstract reaction network can be assigned known molecules while satisfying mass balance and specified reaction mechanisms. The authors prove the general decision problem NP-complete and present a backtracking-and-pruning algorithm for practical instances. The result concerns computational assignment under a defined database and rule set; it does not show that an assigned network will be kinetically viable in a laboratory.

Why it matters

Assigning real molecules to an abstract reaction network while preserving mass balance and allowed mechanisms is computationally hard, but pruning helps in practice.

Limits and context

  • The result concerns computational assignment under a defined database and rule set; it does not show that an assigned network will be kinetically viable in a laboratory.

Key claims

  1. Assigning real molecules to an abstract reaction network while preserving mass balance and allowed mechanisms is computationally hard, but pruning helps in practice.

    Qualification: The result concerns computational assignment under a defined database and rule set; it does not show that an assigned network will be kinetically viable in a laboratory.

    Evidence: source-2026-08-06-016

Sources

  1. arXiv preprint 2608.04635arXiv · primary research

Corrections

No corrections have been recorded for this story.